Chapter 8 Youtube references.

8.1 Anaconda set up, Robust Data Science Environment with Miniconda and Conda-Forge.

Anaconda set up

Bioinformatics - Downloading and Setting Up Conda Environments.

8.2 Quality control & preprocessing of raw reads

Bioinformatics - SRA Download, QC, and Trimming.

RNA-seq course: Quality control & preprocessing of raw reads
Good explanation of the fastQC html plots.

8.3 Trimmomatic.

RNA Sequencing 3: Trimmomatic
Good explanation of the fastQC html plots.

Topic: Metagenomics Lesson 2 Demo 2.2 - Trimmomatic

8.4 Building Genome Index and Aligning with STAR

Bioinformatics - Building Genome Index and Aligning with STAR

How to use the Cat command